Bulk Gene Search System for Java
Requirements
- Computer with java 1.3 or higher installed.
- The application has been tested on Windows 98, NT, 2000 and XP.
- The application does not run on Mac OS 9, since there is no java 1.3 support for this platform.
- The application also works on Solaris, Linux and FreeBSD
How to Use BGSSJ
- Download the BGSSJ Client program file,BGSSJ_*.exe (only Windows OS), BGSSJ_*.jar(run "java -jar BGSSJ_*.jar" from the command line)
- Simply input the UniGene cluster ID (eg. Hs.100002) or Gene symbols (eg. YMEL1)
- Gene names and associated gene functions within the linked
databases will be generated.
- Multiple accession numbers (or symbols) may be entered and searched at the same
time.
About BGSSJ
-
The BGSSJ allows for easy and interactive querying using different gene identifiers (GenBank ID, UniGene, SwissProt, gene symbol), generates a summary page with listings of the frequencies of Gene Ontology annotations for each functional category (cluster), and separate pages with listings of annotations for each gene in a cluster, and provides quantitative and statistical output files. The visualization browser allows users to navigate the cluster hierarchy displayed in a tree-like structure and explore the associated genes or proteins of each cluster through a user-friendly interface. BGSSJ will save time and enhance the ability to analyze gene expression and proteomics data.
Links
If you have any problem about this system, please contact
Hsuan-Cheng Huang or Hsueh-Fen Juan.
Last modified: Feb. 12 2004